Detailed information of matrix profile MA1663.1

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Profile summary
Name: NAC050
Matrix ID: MA1663.1
Class: GCM domain factors
Family: NAC
Collection: CORE
Taxon: Plants
Species: Arabidopsis thaliana
Data Type: DAP-seq
Validation: 26617990
Uniprot ID: Q9SQX9  
Source: 27203113
Comment:

Sequence logo

Frequency matrix

         
A [ 55 216 335 0 0 0 44 62 180 202 102 248 0 599 531 0 ]
C [ 0 0 98 599 0 0 28 184 50 86 231 93 585 0 68 0 ]
G [ 0 128 106 0 158 0 526 58 194 122 87 178 8 0 0 599 ]
T [ 544 255 60 0 441 599 1 295 175 189 179 80 6 0 0 0 ]

Binding sites information

No Binding sites available for this model.

External links

Matrix ID Base ID Version Name Species Family Class Sequence logo
MA1663.1 MA1663 1 NAC050 Arabidopsis thaliana
NAC GCM domain factors
MA1663.2 MA1663 2 NAC050 Arabidopsis thaliana
NAC GCM domain factors
MA1663.3 MA1663 3 NAC050 Arabidopsis thaliana
NAC GCM domain factors
     
There is no centrality information of the model.

TFFM details

TFFM ID: TFFM0648.1

ChIP-seq Centrality
-log(P-value): 18801.8

TFFM first order summary logos

TFFM details

TFFM ID: TFFM0648.1

ChIP-seq Centrality
-log(P-value): 19064.4

TFFM detailed summary logos

Description:

Alias:

Symbol:

Consensus:

Included Models:

GC Content: